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Liftoff

Description

liftoff website

Here we introduce Liftoff, an accurate tool that maps annotations in GFF or GTF between assemblies of the same, or closely-related species. Unlike current coordinate lift-over tools which require a pre-generated “chain” file as input, Liftoff is a standalone tool that takes two genome assemblies and a reference annotation as input and outputs an annotation of the target genome.

Environment Modules

Run module spider liftoff to find out what environment modules are available for this application.

Environment Variables

  • HPC_LIFTOFF_DIR - installation directory
  • HPC_LIFTOFF_BIN - executable directory

Categories

phylogenetics