LEfSe¶

Description¶

LEfSe (Linear discriminant analysis Effect Size) determines the features (organisms, clades, operational taxonomic units, genes, or functions) most likely to explain differences between classes by coupling standard tests for statistical significance with additional tests encoding biological consistency and effect relevance.

Environment Modules¶

Run module spider lefse to find out what environment modules are available for this application.

Environment Variables¶

HPC_LEFSE_DIR - installation directory
HPC_LEFSE_BIN - executable directory

Categories¶

phylogenetics