LDhat¶
Description¶
LDhat is a package written in the C and C++ languages for the analysis of recombination rates from population genetic data. The package is available either as C/C++ source code.
Environment Modules¶
Run module spider ldhat to find out what environment modules are available for this application.
Environment Variables¶
- HPC_LDHAT_DIR - installation directory
- HPC_LDHAT_BIN - executable directory
Additional Usage Information¶
The following programs are included:
| Program | Function |
|---|---|
| convert | Simple manipulation of DNA sequence data |
| pairwise | Parametric and nonparametric analyses of recombination |
| interval | Estimation of variable recombination rates |
| rhomap | Estimation of variable recombination rates in the presence of hotspots |
| fin | Simulation of genetic variation data in LDhat format |
Categories¶
biology, genomics