Lazypipe¶

Description¶

Lazypipe is a Unix pipeline for analyzing Next Generation Sequence (NGS) data. The main emphasis is on assembling, taxonomic binning and taxonomic profiling of bacterial/viral sequences. Lazypipe is implemented as a collection of Perl, C++, and R programs with a command-line user interface written in Perl. Our implementation allows to execute the entire pipeline with a single command or to perform each analysis step one at a time. This allows for great flexibility when working with large NGS libraries.

Environment Modules¶

Run module spider lazypipe to find out what environment modules are available for this application.

Environment Variables¶

HPC_LAZYPIPE_DIR - installation directory
HPC_LAZYPIPE_BIN - executable directory

Categories¶

genomics