Skip to content

Lambda

Description

lambda website

Lambda is a local aligner optimized for many query sequences and searches in protein space. It is highly compatible to BLAST (bitscore and e-value statistics, tab seperated and verbose output formats) much faster than BLAST and many other comparable tools supports many other input and output formats, including standards-conformant .sam and .bam and many compression types.

Environment Modules

Run module spider lambda to find out what environment modules are available for this application.

Environment Variables

  • HPC_LAMBDA_DIR - installation directory
  • HPC_LAMBDA_DB - database directory

Citation

If you publish research that uses lambda you have to cite it as follows:

Lambda: the local aligner for massive biological data; Hannes Hauswedell, Jochen Singer, Knut Reinert; Bioinformatics 2014 30 (17): i349-i355; doi: 10.1093/bioinformatics/btu439

Categories

biology, sequencing, phylogenetics