kvarq¶

Description¶

KvarQ: Targeted and direct variant calling in FastQ reads of bacterial genomes The program KvarQ performs rapid in silico genotyping for selected loci (e.g. phylogenetic SNPs, drug resistance mutations) in bacterial genome sequences in FastQ format. Mapping to a whole-genome reference sequence or de novo assembly or the short reads is not necessary. Modules system sets up the following environment variables for this module:

Environment Modules¶

Run module spider kvarq to find out what environment modules are available for this application.

Environment Variables¶

HPC_KVARQ_DIR - installation directory
HPC_KVARQ_BIN - executable directory

Categories¶

biology