kallisto¶
Description¶
kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment.
Environment Modules¶
Run module spider kallisto to find out what environment modules are available for this application.
Environment Variables¶
- HPC_KALLISTO_DIR - installation directory
- HPC_KALLISTO_BIN - executable directory
- HPC_KALLISTO_DOC - documentation directory
- HPC_KALLISTO_EXE - examples directory
Categories¶
biology, ngs, rna-seq