kallisto¶

Description¶

kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. Compiled with '-DUSE_HDF5=ON' with cmake for HDF5 support.

Environment Modules¶

Run module spider kallisto to find out what environment modules are available for this application.

Environment Variables¶

HPC_KALLISTO_DIR - installation directory
HPC_KALLISTO_BIN - executable directory

Categories¶

biology, ngs, rna-seq