KaKs

Description

kaks website

KaKs_Calculator adopts model selection and model averaging to calculate nonsynonymous (Ka) and synonymous (Ks) substitution rates, attempting to include as many features as needed for accurately capturing evolutionary information in protein-coding sequences. In addition, several existing methods for calculating Ka and Ks are also incorporated into KaKs_Calculator.

Environment Modules

Run module spider kaks to find out what environment modules are available for this application.

Environment Variables

• HPC_KAKS_DIR - installation directory
• HPC_KAKS_BIN - executable directory
• HPC_KAKS_DOC - documentation directory
• HPC_KAKS_EX - examples directory

Categories

biology, genomics, phylogenetics