Kaiju¶

Description¶

Kaiju is a program for the taxonomic classification of high-throughput sequencing reads, e.g., Illumina or Roche/454, from whole-genome sequencing of metagenomic DNA. Reads are directly assigned to taxa using the NCBI taxonomy and a reference database of protein sequences from microbial and viral genomes. * KAIJU_INDEXES - indexes directory

Environment Modules¶

Run module spider kaiju to find out what environment modules are available for this application.

Environment Variables¶

HPC_KAIJU_DIR - installation directory
HPC_KAIJU_BIN - executable directory

Categories¶

biology, phylogenetics