Usage

To run jModelTest from the command-line load the jmodeltest module and use the jmodeltest command in place of the java -jar jModelTest.jar command specified in the manual. You can use the jar file directly if you want, of course. It's located at $HPC_JMODELTEST_DIR/jModelTest.jar. Make sure to use the -tr X option where 'X' is the number of threads to use. The default is 8. Make sure your job script requests appropriate number of computing cores with the #PBS -l nodes=1:ppn=X.

To run a short interactive jModelTest session, please visit our GUI Programs Help Page for help.