npScarf

Description

japsa website

npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assemblies in real-time with Oxford Nanopore sequencing. The pipeline can run on a computing cluster as well as on a laptop computer for microbial datasets. It also facilitates the real-time analysis of positional information such as gene ordering and the detection of genes from mobile elements (plasmids and genomic islands).

Environment Modules

Run module spider japsa to find out what environment modules are available for this application.

Environment Variables

• HPC_NPSCARF_DIR - installation directory
• HPC_NPSCARF_BIN - executable directory

Categories

phylogenetics