IVA¶
Description¶
Iterative Virus Assembler - de novo virus assembler of Illumina paired reads.
Environment Modules¶
Run module spider iva to find out what environment modules are available for this application.
Environment Variables¶
- HPC_IVA_DIR - installation directory
- HPC_IVA_BIN - executable directory
Citation¶
If you publish research that uses iva you have to cite it as follows:
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastouli E, Keane JA, Kellam P, Otto TD. Bioinformatics. 2015 Jul 15;31(14):2374-6. doi: 10.1093/bioinformatics/btv120. Epub 2015 Feb 28.
Categories¶
phylogenetics