ITSx¶

Description¶

ITSx is an open source software utility to extract the highly variable ITS1 and ITS2 subregions from ITS sequences, which is commonly used as a molecular barcode for e.g. fungi.

Environment Modules¶

Run module spider itsx to find out what environment modules are available for this application.

Environment Variables¶

HPC_ITSX_DIR - installation directory
HPC_ITSX_BIN - executable directory

Citation¶

If you publish research that uses itsx you have to cite it as follows:

Bengtsson-Palme, J., Ryberg, M., Hartmann, M., Branco, S., Wang, Z., Godhe, A., De Wit, P., Sánchez-García, M., Ebersberger, I., de Sousa, F., Amend, A., Jumpponen, A., Unterseher, M., Kristiansson, E., Abarenkov, K., Bertrand, Y.J.K., Sanli, K., Eriksson, K.M., Vik, U., Veldre, V. and Nilsson, R.H. (2013), Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data. Methods Ecol Evol, 4: 914-919. https://doi.org/10.1111/2041-210X.12073

Categories¶

phylogenetics