ITSx¶

Description¶

ITSx is an open source software utility to extract the highly variable ITS1 and ITS2 subregions from ITS sequences, which is commonly used as a molecular barcode for e.g. fungi.

Environment Modules¶

Run module spider itsx to find out what environment modules are available for this application.

Environment Variables¶

HPC_ITSX_DIR - installation directory
HPC_ITSX_BIN - executable directory

Citation¶

If you publish research that uses itsx you have to cite it as follows:

Methods in Ecology and Evolution, 4: 914-919, 2013 (DOI: 10.1111/2041-210X.12073)

Categories¶

phylogenetics