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ITK-SNAP

Description

itksnap website

SNAP is a software application used to segment structures in 3D medical images. It provides semi-automatic segmentation using active contour methods, as well as manual delineation and image navigation. In addition to these core functions, SNAP provides a number of supporting utilities.

Environment Modules

Run module spider itksnap to find out what environment modules are available for this application.

Environment Variables

  • HPC_ITKSNAP_DIR - installation directory
  • HPC_ITKSNAP_BIN - executable directory

Citation

If you publish research that uses itksnap you have to cite it as follows:

Paul A. Yushkevich, Joseph Piven, Heather Cody Hazlett, Rachel Gimpel Smith, Sean Ho, James C. Gee, and Guido Gerig. User-guided 3D active contour segmentation of anatomical structures: Significantly improved efficiency and reliability. Neuroimage. 2006 Jul 1; 31(3):1116-28. http://doi.org/10.1016/j.neuroimage.2006.01.015

Categories

biology, neuroscience, imaging