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IsoSeq3

Description

isoseq3 website

IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads. IsoSeq3 contains the newest tools to identify transcripts in PacBio single-molecule sequencing data. Starting in SMRT Link v6.0.0, those tools power the IsoSeq3 GUI-based analysis application. A composable workflow of existing tools and algorithms, combined with a new clustering technique, allows to process the ever-increasing yield of PacBio machines with similar performance to IsoSeq1 and IsoSeq2.

Environment Modules

Run module spider isoseq3 to find out what environment modules are available for this application.

Environment Variables

  • HPC_ISOSEQ3_DIR - installation directory
  • HPC_ISOSEQ3_BIN - executable directory

Categories

biology, ngs