Skip to content

irep

Description

irep website

iRep is a method for determining replication rates for bacteria from single time point metagenomics sequencing and draft-quality genomes.

Environment Modules

Run module spider irep to find out what environment modules are available for this application.

Environment Variables

  • HPC_IREP_DIR - installation directory
  • HPC_IREP_BIN - executable directory

Citation

If you publish research that uses irep you have to cite it as follows:

Brown, C., Olm, M., Thomas, B. et al. Measurement of bacterial replication rates in microbial communities. Nat Biotechnol 34, 1256–1263 (2016). https://doi.org/10.1038/nbt.3704

Categories

biology, genomics