InterProScan¶
Description¶
InterProScan software for querying sequences against the InterPro databases.
Environment Modules¶
Run module spider iprscan to find out what environment modules are available for this application.
Environment Variables¶
- HPC_IPROSCAN_DIR - main directory
Additional Usage Information¶
Interproscan 5 series is run differently from the "4.x" series. To see the help message, load the module and run the followig:
interproscan.sh
To set the amount of memory Interproscan can use set the _JAVA_OPTIONS variable to a value different from the default 2048M, e.g.
$ export _JAVA_OPTIONS="-Xmx8192M"
Categories¶
biology