Inspector¶

Description¶

Inspector is a tool for assembly evaluation with long read data. The input includes a contig file, long reads (PacBio CLR, PacBio HiFi, Oxford Nanopore, or mixed platform), and a reference genome (optional). The output includes A summary report, read-to-contig alignment file, a list of structrual errors and small-scale errors.

Environment Modules¶

Run module spider inspector to find out what environment modules are available for this application.

Environment Variables¶

HPC_INSPECTOR_DIR - installation directory
HPC_INSPECTOR_BIN - executable directory

Citation¶

If you publish research that uses Inspector you have to cite it as follows:

Chen, Y., Zhang, Y., Wang, A.Y. et al. Accurate long-read de novo assembly evaluation with Inspector. Genome Biol 22, 312 (2021). https://doi.org/10.1186/s13059-021-02527-4

Categories¶

biology, genomics