IMPUTE2¶

Description¶

IMPUTE version 2 (also known as IMPUTE2) is a genotype imputation and haplotype phasing program based on ideas from Howie et al. 2009

Environment Modules¶

Run module spider impute2 to find out what environment modules are available for this application.

Environment Variables¶

HPC_IMPUTE2_DIR - installation directory
HPC_IMPUTE2_BIN - executable directory
HPC_IMPUTE2_DOC - documentation directory
HPC_IMPUTE2_EXE - examples directory

Citation¶

If you publish research that uses impute2 you have to cite it as follows:

B. N. Howie, P. Donnelly, and J. Marchini (2009) A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. PLoS Genetics 5(6): e1000529

Categories¶

phylogenetics