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Illumiprocessor

Description

illumiprocessor website

illumiprocessor is a tool to batch process illumina sequencing reads using the excellent trimmomatic package. The program takes a configuration file that is formatted in Microsoft Windows INI file format (key:value pairs, see the example file).

Environment Modules

Run module spider illumiprocessor to find out what environment modules are available for this application.

Environment Variables

  • HPC_ILLUMIPROCESSOR_DIR - installation directory
  • HPC_ILLUMIPROCESSOR_BIN - executable directory

Citation

If you publish research that uses illumiprocessor you have to cite it as follows:

Faircloth, BC. 2013. illumiprocessor: a trimmomatic wrapper for parallel adapter and quality trimming. http://dx.doi.org/10.6079/J9ILL.

Please be sure also to cite trimmomatic:

Bolger, A. M., Lohse, M., & Usadel, B. (2014). Trimmomatic: A flexible trimmer for Illumina Sequence Data. Bioinformatics. http://dx.doi.org/10.1093/bioinformatics/btu170.

Categories

phylogenetics