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illumina-utils

Description

illumina-utils website

This is a small library and a bunch of clients to perform various operations on FASTQ files (such as demultiplexing raw Illumina files, merging partial or complete overlaps, and/or performing quality filtering). It works with paired-end FASTQ files and has been tested with Illumina runs processed with CASAVA version 2.11.0 or higher.

Environment Modules

Run module spider illumina-utils to find out what environment modules are available for this application.

Environment Variables

  • HPC_ILLUMINAUTILS_DIR - installation directory
  • HPC_ILLUMINAUTILS_BIN - executable directory

Citation

If you publish research that uses illumina-utils you have to cite it as follows:

Eren AM, Vineis JH, Morrison HG, Sogin ML (2013) A Filtering Method to Generate High Quality Short Reads Using Illumina Paired-End Technology. PLOS ONE 8(6): e66643. https://doi.org/10.1371/journal.pone.0066643

Categories

phylogenetics