IGV

Description

igv website

The Integrative Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. It supports a wide variety of data types, including array-based and next-generation sequence data, and genomic annotations. Note: export _JAVA_OPTIONS="-Xmx?g" where ? equals to the available memory.

Environment Modules

Run module spider igv to find out what environment modules are available for this application.

Environment Variables

• HPC_IGV_DIR - installation directory
• HPC_IGV_BIN - executable directory
• HPC_IGV_DOC - documentation directory

Categories

biology, ngs, phylogenetics