iGTP

Description

igtp website

iGTP is a program designed to help biologists infer species phylogenies from gene phylogenies, using the gene tree parsimony (GTP) approach. The program implements efficient heuristics which allows it to handle large-scale species tree inference under the duplication, duplication-loss, and deep coalescence reconciliation costs. iGTP provides the following features: * Allowing unrooted input gene trees * Providing three-dimensional tree visualization * Computing reconciliation costs

Environment Modules

Run module spider igtp to find out what environment modules are available for this application.

Environment Variables

• HPC_IGTP_DIR - installation directory
• HPC_IGTP_BIN - executable directory

Citation

If you publish research that uses iGTP you have to cite it as follows: Ruchi Chaudhary, Mukul S. Bansal, André Wehe, David Fernández-Baca, Oliver Eulenstein, "iGTP: A software package for large-scale gene tree parsimony analysis", BMC Bioinformatics 2010, 11:574.

Categories

biology, phylogenetics