ibdne¶
Description¶
The IBDNe program estimates the historical effective population size of a homogenous population. The input for the IBDNe program is the set of identity-by-descent (IBD) segments detected by the IBDseq program. IBDseq is a software program for detecting segments of identity-by-descent (IBD) and homozygosity-by-descent (HBD) in unphased genetic sequence data. IBDseq can analyze large data sets with thousands of individuals, and it can analyze data with multi-allelic markers.
Environment Modules¶
Run module spider ibdne to find out what environment modules are available for this application.
Environment Variables¶
- HPC_IBDNE_DIR - installation directory
- HPC_IBDNE_BIN - executable directory
Citation¶
If you publish research that uses ibdne you have to cite it as follows:
Categories¶
biology, ngs