Skip to content

ibdne

Description

ibdne website

The IBDNe program estimates the historical effective population size of a homogenous population. The input for the IBDNe program is the set of identity-by-descent (IBD) segments detected by the IBDseq program.

IBDseq is a software program for detecting segments of identity-by-descent (IBD) and homozygosity-by-descent (HBD) in unphased genetic sequence data. IBDseq can analyze large data sets with thousands of individuals, and it can analyze data with multi-allelic markers.

Environment Modules

Run module spider ibdne to find out what environment modules are available for this application.

Environment Variables

  • HPC_IBDNE_DIR - installation directory
  • HPC_IBDNE_BIN - executable directory

Citation

If you publish research that uses ibdne you have to cite it as follows:

S R Browning and B L Browning (2015) Accurate non-parametric estimation of recent effective population size from segments of identity by descent. American Journal of Human Genetics. In Press. https://doi.org/10.1016/j.ajhg.2015.07.012

Categories

biology, ngs