iAssembler¶

Description¶

iAssembler is a standalone package to assemble ESTs generated using Sanger and/or Roche-454 pyrosequencing technologies into contigs. The pipeline gives much higher accuracy in EST assembly than other existing assemblers by employing an iterative assembly strategy and automated error corrections of mis-assemblies.

Environment Modules¶

Run module spider iassembler to find out what environment modules are available for this application.

Environment Variables¶

HPC_IASSEMLBER_DIR - installation directory
HPC_IASSEMLBER_BIN - executable directory
HPC_IASSEMLBER_DOC - documentation directory

Citation¶

If you publish research that uses iassembler you have to cite it as follows:

Zheng, Y., Zhao, L., Gao, J. et al. iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences. BMC Bioinformatics 12, 453 (2011). https://doi.org/10.1186/1471-2105-12-453

Categories¶

biology, assembly