hybkit

Description

hybkit website

Welcome to hybkit, a toolkit for analysis of hyb-format chimeric (hybrid) RNA sequence data defined with the Hyb software package by Travis et al. (Methods 2014). This genomic data-type is generated from RNA proximitiy-ligation and ribonomics techniques such as Crosslinking, Ligation, and Sequencing of Hybrids (CLASH; Helwak et al. (Cell 2013)), Quick CLASH (qCLASH; Gay et al. (J. Virol. 2018)). This software is available via Github, at http://www.github.com/RenneLab/hybkit . Full project documentation is available at hybkit's ReadTheDocs.

Environment Modules

Run module spider hybkit to find out what environment modules are available for this application.

Environment Variables

• HPC_HYBKIT_DIR - installation directory
• HPC_HYBKIT_BIN - executable directory

Additional Usage Information

To see the help message, run the following command:

$ hyb_filter --h

Here is an example usage command:

$ hyb_filter -i my_hyb_file.hyb -f my_hyb_file.vienna --filter any_seg_contains kshv

Categories

biology