humann2¶
Description¶
HUMAnN is a pipeline for efficiently and accurately profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data (typically millions of short DNA/RNA reads). This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community and its members.
Environment Modules¶
Run module spider humann2 to find out what environment modules are available for this application.
Environment Variables¶
- HPC_HUMANN2_DIR - installation directory
- HPC_HUMANN2_BIN - executable directory
Citation¶
If you publish research that uses humann2 you have to cite it as follows:
Categories¶
phylogenetics