humann2¶

Description¶

HUMAnN is a pipeline for efficiently and accurately profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data (typically millions of short DNA/RNA reads). This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community and its members.

Environment Modules¶

Run module spider humann2 to find out what environment modules are available for this application.

Environment Variables¶

HPC_HUMANN2_DIR - installation directory
HPC_HUMANN2_BIN - executable directory

Citation¶

If you publish research that uses humann2 you have to cite it as follows:

Franzosa, E.A., McIver, L.J., Rahnavard, G. et al. Species-level functional profiling of metagenomes and metatranscriptomes. Nat Methods 15, 962–968 (2018). https://doi.org/10.1038/s41592-018-0176-y

Categories¶

phylogenetics