HUMAnN¶

Description¶

HUMAnN is a pipeline for efficiently and accurately profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data (typically millions of short DNA/RNA reads). This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community and its members.

Environment Modules¶

Run module spider humann to find out what environment modules are available for this application.

Environment Variables¶

HPC_HUMANN_DIR - installation directory
HPC_HUMANN_BIN - executable directory

Citation¶

If you publish research that uses humann you have to cite it as follows:

Francesco Beghini, Lauren J McIver, Aitor Blanco-Míguez, Leonard Dubois, Francesco Asnicar, Sagun Maharjan, Ana Mailyan, Paolo Manghi, Matthias Scholz, Andrew Maltez Thomas, Mireia Valles-Colomer, George Weingart, Yancong Zhang, Moreno Zolfo, Curtis Huttenhower, Eric A Franzosa, Nicola Segata (2021) Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3 eLife https://doi.org/10.7554/eLife.65088.

Categories¶

sequencing, biology