HUMAnN¶
Description¶
HUMAnN is a pipeline for efficiently and accurately profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data (typically millions of short DNA/RNA reads). This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community and its members.
Environment Modules¶
Run module spider humann to find out what environment modules are available for this application.
Environment Variables¶
- HPC_HUMANN_DIR - installation directory
- HPC_HUMANN_BIN - executable directory
Citation¶
If you publish research that uses humann you have to cite it as follows:
Francesco Beghini, Lauren J McIver, Aitor Blanco-Mìguez, Leonard Dubois, Francesco Asnicar, Sagun Maharjan, Ana Mailyan, Andrew Maltez Thomas, Paolo Manghi, Mireia Valles-Colomer, George Weingart, Yancong Zhang, Moreno Zolfo, Curtis Huttenhower, Eric A Franzosa, Nicola Segata.
eLife 2021;10:e65088
Categories¶
sequencing, biology