homopolish¶
Description¶
Homopolish is a genome polisher originally developed for Nanopore and subsequently extended for PacBio CLR. It generates a high-quality genome (>Q50) for virus, bacteria, and fungus. Nanopore/PacBio systematic errors are corrected by retreiving homologs from closely-related genomes and polished by an SVM. Modules system sets up the following environment variables for this module:
Environment Modules¶
Run module spider homopolish to find out what environment modules are available for this application.
Environment Variables¶
- HPC_HOMOPOLISH_DIR - installation directory
- HPC_HOMOPOLISH_BIN - executable directory
Citation¶
If you publish research that uses homopolish you have to cite it as follows:
Categories¶
biology