hmmer2go¶

Description¶

HMMER2GO is a command line application to map DNA sequences, typically transcripts, to Gene Ontology based on the similarity of the query sequences to curated HMM models for protein families represented in Pfam.

Environment Modules¶

Run module spider hmmer2go to find out what environment modules are available for this application.

Environment Variables¶

HPC_HMMER2GO_DIR - installation directory

Additional Usage Information¶

Here is an example on how to use Hummer2go:'

$ module load hmmer2go/0.18.1
$ hmmer2go getorf -i /path/to/genes.fasta -o /current/dir/or/path/to/genes_orfs.faa

Categories¶

phylogenetics, biology