Usage

Phmmer and Hmmsearch only work with fasta formatted target sequence databases. We provide the following fasta formatted databases either downloaded or extracted from the BLAST databases:

• UniProt - /project/bio/fasta/uniprot/uniprot_sprot.fasta
• NCBI NR - /project/bio/fasta/nr/nr.fa
• NCBI RefSeq - /project/bio/fasta/refseq/refseq_protein.fa