HLAminer¶
Description¶
HLA predictions from NGS shotgun data
Environment Modules¶
Run module spider hlaminer to find out what environment modules are available for this application.
Environment Variables¶
- HPC_HLAMINER_DIR - installation directory
- HPC_HLAMINER_BIN - executable directory
- HPC_HLAMINER_DOC - documentation directory
- HPC_HLAMINER_EXE - examples directory
- HPC_HLAMINER_DBD - examples directory
Citation¶
If you publish research that uses hlaminer you have to cite it as follows:
Warren, R.L., Choe, G., Freeman, D.J. et al. Derivation of HLA types from shotgun sequence datasets. Genome Med 4, 95 (2012). https://doi.org/10.1186/gm396
Categories¶
biology, phylogenetics