hiphase¶

Description¶

HiPhase will phase variant calls made from PacBio HiFi datasets. Key features relative to other phasing tools include: * Joint phasing of small variants and structural variants * Support for multi-allelic variation * Creates longer, correct phase blocks relative to the current best practice * No downsampling of the data * Novel algorithms: dual-mode allele assignment and core A* phasing algorithm * Quality of life additions: innate multi-threading, simultaneous haplotagging and statistics generation

Environment Modules¶

Run module spider hiphase to find out what environment modules are available for this application.

Environment Variables¶

HPC_HIPHASE_DIR - installation directory
HPC_HIPHASE_BIN - executable directory

Categories¶

biology, ngs