Hificnv¶

Description¶

HiFiCNV is a copy number variant (CNV) caller optimized for HiFi reads. Key features include: * Segmentation and calling optimized for HiFi germline WGS * Automatic GC-bias estimation and correction * Generates bigwig tracks for depth and allele frequency to visualize CNV-scale events in IGV * CNV output in bedgraph and VCF formats * Efficient multi-threaded analysis

Environment Modules¶

Run module spider hificnv to find out what environment modules are available for this application.

Environment Variables¶

HPC_HIFICNV_DIR - installation directory
HPC_HIFICNV_BIN - executable directory

Categories¶

biology, genomics, ngs