Hifiasm¶

Description¶

Hifiasm is a fast haplotype-resolved de novo assembler for PacBio Hifi reads. Unlike most existing assemblers, hifiasm starts from uncollapsed genome. Thus, it is able to keep the haplotype information as much as possible.

Environment Modules¶

Run module spider hifiasm to find out what environment modules are available for this application.

Environment Variables¶

HPC_HIFIASM_DIR - installation directory
HPC_HIFIASM_BIN - executable directory

Categories¶

phylogenetics