hic-lift

Description

hic-lift website

HiCLift (previously known as pairLiftOver), is a fast and efficient tool that can convert the genomic coordinates of chromatin contacts such as Hi-C and Micro-C from one assembly to another, including the latest T2T genome.

Environment Modules

Run module spider hic-lift to find out what environment modules are available for this application.

Environment Variables

• HPC_HICLIFT_DIR - installation directory
• HPC_HICLIFT_BIN - executable directory

Categories

genomics