harvesttools¶

Description¶

HarvestTools is a utility for creating and interfacing with Gingr files, which are efficient archives that the Harvest Suite uses to store reference-compressed multi-alignments, phylogenetic trees, filtered variants and annotations. Though designed for use with Parsnp and Gingr, HarvestTools can also be used for generic conversion between standard bioinformatics file formats.

Environment Modules¶

Run module spider harvesttools to find out what environment modules are available for this application.

Environment Variables¶

HPC_HARVESTTOOLS_DIR - installation directory
HPC_HARVESTTOOLS_BIN - executable directory

Categories¶

phylogenetics, biology