Citation

If you publish research that uses hapsembler you have to cite it as follows:

To cite Hapsembler and Encore:

Nilgun Donmez and Michael Brudno (2011) Hapsembler: an assembler for highly polymorphic genomes. In Proceedings of the 15th Annual international conference on Research in computational molecular biology (RECOMB'11), Springer-Verlag, Berlin, Heidelberg, 38-52. http://doi.org/10.1007/978-3-642-20036-6_5

To cite Scarpa:

Nilgun Donmez and Michael Brudno (2013) Scarpa: Scaffolding reads with practical algorithms, Bioinformatics, 29 (2013), 428-434 https://doi.org/10.1093/bioinformatics/bts716