haphpipe¶
Description¶
HAplotype and PHylodynamics pipeline for viral assembly, population genetics, and phylodynamics.
Environment Modules¶
Run module spider haphpipe to find out what environment modules are available for this application.
Environment Variables¶
- HPC_HAPHPIPE_DIR - installation directory
- HPC_HAPHPIPE_BIN - executable directory
Citation¶
If you publish research that uses haphpipe you have to cite it as follows:
Gibson, K.M.; Steiner, M.C.; Rentia, U.; Bendall, M.L.; Pérez-Losada, M.; Crandall, K.A. Validation of Variant Assembly Using HAPHPIPE with Next-Generation Sequence Data from Viruses. Viruses 2020, 12, 758. https://doi.org/10.3390/v12070758
The Haphpipe GitHub: https://github.com/gwcbi/haphpipe
Categories¶
phylogenetics, biology