HapCompass¶

Description¶

HapCompass implements a novel HAPCOMPASS algorithm for haplotype assembly of densely sequenced human genome data. The algorithm operates on a graph where SNPs are nodes and edges are defined by the sequencing reads and viewed as supporting evidence of co-occuring SNP alleles in a haplotype.

Environment Modules¶

Run module spider hapcompass to find out what environment modules are available for this application.

Environment Variables¶

HPC_HAPCOMPASS_DIR - installation directory
HPC_HAPCOMPASS_BIN - executable directory
HPC_HAPCOMPASS_DOC - documentation directory
HPC_HAPCOMPASS_EXE - examples directory

Categories¶

imaging, ngs, genomics