halla¶

Description¶

HAllA (Hierarchical All-against-All association) is a method for finding blocks of associated features in high-dimensional datasets measured from a common set of samples.

Environment Modules¶

Run module spider halla to find out what environment modules are available for this application.

Environment Variables¶

HPC_HALLA_DIR - installation directory
HPC_HALLA_BIN - executable directory
HPC_BIOBAKERY_DB - executable directory

Citation¶

If you publish research that uses halla you have to cite it as follows:

Ghazi, A. R., Sucipto, K., Rahnavard, A., Franzosa, E. A., McIver, L. J., Lloyd-Price, J., Schwager, E., Weingart, G., Moon, Y. S., Morgan, X. C., Waldron, L., & Huttenhower, C. (2019). High-sensitivity pattern discovery in large, paired multi-omic datasets. HAllA Project Website. https://huttenhower.sph.harvard.edu/halla

Categories¶

phylogenetics