halla¶

Description¶

HAllA (Hierarchical All-against-All association) is a method for finding blocks of associated features in high-dimensional datasets measured from a common set of samples.

Environment Modules¶

Run module spider halla to find out what environment modules are available for this application.

Environment Variables¶

HPC_HALLA_DIR - installation directory
HPC_HALLA_BIN - executable directory
HPC_BIOBAKERY_DB - executable directory

Citation¶

If you publish research that uses halla you have to cite it as follows:

Andrew R. Ghazi, Kathleen Sucipto, Ali Rahnavard, Eric A. Franzosa, Lauren J. McIver, Jason Lloyd-Price, Emma Schwager, George Weingart, Yo Sup Moon, Xochitl C. Morgan, Levi Waldron and Curtis Huttenhower, “High-sensitivity pattern discovery in large, paired multi-omic datasets” https://huttenhower.sph.harvard.edu/halla.

Categories¶

phylogenetics