hal¶
Description¶
HAL is a structure to efficiently store and index multiple genome alignments and ancestral reconstructions. HAL is a graph-based representation which provides several advantages over matrix/block-based formats such as MAF, such as improved scalability and the ability to perform queries with respect to an arbitrary reference or subtree.
Environment Modules¶
Run module spider hal to find out what environment modules are available for this application.
Environment Variables¶
- HPC_HAL_DIR - installation directory
- HPC_HAL_BIN - executable directory
Citation¶
If you publish research that uses hal you have to cite it as follows:
Categories¶
phylogenetics