Usage

The Hail session object must be initialized with a log file to which you have write access (the default instance will try to write logs to the application directory, which will fail). Here is an example of this initialization in an interactive Python session:

$ module load hail/0.2.77
$ python
>>> import hail as hl
>>> hl.init(log='/blue/groupname/username/hail/test.log', tmp_dir='/blue/groupname/username/hail/tmp')
>>> mt = hl.balding_nichols_model(n_populations=3,n_samples=10,n_variants=100)
>>> mt.show()