GUSHR

Description

gushr website

Assembly-free construction of UTRs from short read RNA-Seq data on the basis of coding sequence annotation. This tool has been adapted to the format needs of AUGUSTUS/BRAKER and employs GeMoMa for generating UTRs from RNA-Seq coverage data.

Environment Modules

Run module spider gushr to find out what environment modules are available for this application.

Environment Variables

• HPC_GUSHR_DIR - installation directory
• HPC_GUSHR_BIN - executable directory

Categories

biology, genomics