GSEA¶

Description¶

Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states (e.g. phenotypes).

Environment Modules¶

Run module spider gsea to find out what environment modules are available for this application.

Environment Variables¶

HPC_GSEA_DIR - installation directory
HPC_GSEA_BIN - executable directory

Citation¶

If you publish research that uses gsea you have to cite it as follows:

To cite your use of the GSEA software, a joint project of UC San Diego and Broad Institute, please reference Subramanian, Tamayo, et al.

Categories¶

biology, genomics