GSEA¶
Description¶
Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states (e.g. phenotypes).
Environment Modules¶
Run module spider gsea
to find out what environment modules are available for this application.
Environment Variables¶
- HPC_GSEA_DIR - installation directory
- HPC_GSEA_BIN - executable directory
Citation¶
If you publish research that uses gsea you have to cite it as follows:
Subramanian, A., Tamayo, P., Mootha, V. K., Mukherjee, S., Ebert, B. L., Gillette, M. A., Paulovich, A., Pomeroy, S. L., Golub, T. R., Lander, E. S., & Mesirov, J. P. (2005). Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. Proceedings of the National Academy of Sciences, 102(43), 15545–15550. https://doi.org/10.1073/pnas.0506580102
Categories¶
biology, genomics