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GSEA

Description

gsea website

Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states (e.g. phenotypes).

Environment Modules

Run module spider gsea to find out what environment modules are available for this application.

Environment Variables

  • HPC_GSEA_DIR - installation directory
  • HPC_GSEA_BIN - executable directory

Citation

If you publish research that uses gsea you have to cite it as follows:

Subramanian, A., Tamayo, P., Mootha, V. K., Mukherjee, S., Ebert, B. L., Gillette, M. A., Paulovich, A., Pomeroy, S. L., Golub, T. R., Lander, E. S., & Mesirov, J. P. (2005). Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. Proceedings of the National Academy of Sciences, 102(43), 15545–15550. https://doi.org/10.1073/pnas.0506580102

Categories

biology, genomics