GroopM¶

Description¶

GroopM is a metagenomic binning toolset. It leverages spatio-temoral dynamics (differential coverage) to accurately (and almost automatically) extract population genomes from multi-sample metagenomic datasets.

Environment Modules¶

Run module spider groopm to find out what environment modules are available for this application.

Environment Variables¶

HPC_GROOPM_DIR - installation directory
HPC_GROOPM_BIN - executable directory

Citation¶

If you publish research that uses groopm you have to cite it as follows:

https://peerj.com/articles/603/

Categories¶

biology, phylogenetics