GroopM¶

Description¶

GroopM is a metagenomic binning toolset. It leverages spatio-temoral dynamics (differential coverage) to accurately (and almost automatically) extract population genomes from multi-sample metagenomic datasets.

Environment Modules¶

Run module spider groopm to find out what environment modules are available for this application.

Environment Variables¶

HPC_GROOPM_DIR - installation directory
HPC_GROOPM_BIN - executable directory

Citation¶

If you publish research that uses groopm you have to cite it as follows:

Khosravian, P., Emadi, S., Mirjalily, G., & Zamani, B. (2021). QoS-aware service composition based on context-free grammar and skyline in service function chaining using genetic algorithm. PeerJ Computer Science, 7, e603. https://doi.org/10.7717/peerj-cs.603

Categories¶

biology, phylogenetics