Graph_annotation¶
Description¶
Hash-based colored de Bruijn graph with wavelet trie and Bloom filter color compression
Environment Modules¶
Run module spider graph_annotation to find out what environment modules are available for this application.
Environment Variables¶
- HPC_GRAPHANNOTATION_DIR - installation directory
- HPC_GRAPHANNOTATION_BIN - executable directory
Citation¶
If you publish research that uses graph_annotation you have to cite it as follows:
Mustafa, H., Schilken, I., Karasikov, M., Eickhoff, C., Rätsch, G., & Kahles, A. (2019). Dynamic compression schemes for graph coloring. Bioinformatics, 35(3), 407–414. https://doi.org/10.1093/bioinformatics/bty637
Categories¶
phylogenetics