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Graph_annotation

Description

graph_annotation website

Hash-based colored de Bruijn graph with wavelet trie and Bloom filter color compression

Environment Modules

Run module spider graph_annotation to find out what environment modules are available for this application.

Environment Variables

  • HPC_GRAPHANNOTATION_DIR - installation directory
  • HPC_GRAPHANNOTATION_BIN - executable directory

Citation

If you publish research that uses graph_annotation you have to cite it as follows:

Dynamic compression schemes for graph coloring, Bioinformatics, 2018 by Harun Mustafa, Ingo Schilken, Mikhail Karasikov, Carsten Eickhoff, Gunnar Rätsch, and André Kahles.

Categories

phylogenetics