GramCluster¶

Description¶

GramCluster is a fast and accurate progressive clustering algorithm that relies on a grammar-based sequence distance and is particularly useful in clustering large datasets.

Environment Modules¶

Run module spider gramcluster to find out what environment modules are available for this application.

Environment Variables¶

HPC_GRAMCLUSTER_DIR - installation directory
HPC_GRAMCLUSTER_BIN - executable directory

Citation¶

If you publish research that uses gramcluster you have to cite it as follows:

A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences D. J. Russell, S. F. Way, A. K. Benson, and K. Sayood BMC Bioinformatics 2010, 11:601

Categories¶

biology, sequencing