Graftm¶
Description¶
GraftM is a tool for finding genes of interest in metagenomes, metatranscriptomes, and whole genomes. Using modular gene packages, GraftM will search the provided sequences using hmmsearch (HMMER) and place the identified sequences into a pre-constructed phylogenetic tree. The provides fast, phylogenetically informed community profiles and genome annotations. GraftM provides tools to: Create and update custom gene packages to use with GraftM Decorate trees, and of course.. Analyse sequence datasets using these GraftM packages Head over to the GraftM page for more general information.
Environment Modules¶
Run module spider graftm to find out what environment modules are available for this application.
Environment Variables¶
- HPC_GRAFTM_DIR - installation directory
- HPC_GRAFTM_BIN - executable directory
Citation¶
If you publish research that uses graftm you have to cite it as follows:
Categories¶
phylogenetics