goatools¶

Description¶

GOATOOLS is a Python library designed for comprehensive Gene Ontology analyses, including enrichment testing, ontology parsing, term mapping, and visualization.

Environment Modules¶

Run module spider goatools to find out what environment modules are available for this application.

Environment Variables¶

HPC_GOATOOLS_DIR - Installation directory
HPC_GOATOOLS_BIN - Executable directory

Citation¶

If you publish research that uses goatools you have to cite it as follows:

Klopfenstein, D. V., Zhang, L., Pedersen, B. S., Ramírez, F., Vesztrocy, A. W., Naldi, A., Mungall, C. J., Yunes, J. M., Botvinnik, O., Weigel, M., Dampier, W., Dessimoz, C., Flick, P., … Tang, H. (2018). GOATOOLS: A Python library for Gene Ontology analyses. Scientific Reports, 8, Article 10872. https://doi.org/10.1038/s41598-018-28948-z

Categories¶

biology, ontology